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Small editorial changes.

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ejc12 2010-07-25 20:32:47 +00:00
parent 3b7f484858
commit c476602e1a
1 changed files with 10 additions and 10 deletions
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doc/upgrade-1.1.txt
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@ -46,9 +46,9 @@ exceptions:
with the revised ontology. See the section on "Ontology Changes"
below for more information.
* The first time Apache Tomcat starts up after the upgrade, it will
initiate a process that modifies the uploads directory (images), to align
the uploaded files with the revised file storage scheme. See the section
on "File Storage Changes" below for more information.
initiate a process that modifies the uploaded files directory (images), to
align the uploaded files with the revised file storage scheme. See the
section on "File Storage Changes" below for more information.
-------------------------------------------------------------------------------
@ -141,19 +141,19 @@ the automated upgrade process was executed successfully. The ontology alignment
process will create the following files in the Tomcat webapps/vivo/WEB-INF directory:
ontologies/update/logs/knowledgeBaseUpdate.log
a log of a summary of updates that were made to the knowledge base and notes
A log of a summary of updates that were made to the knowledge base and notes
about some recommended manual reviews. This file should end with
"Successfully finished processing ontology changes".
ontologies/update/logs/knowledgeBaseUpdate.error.log
a log of errors that were encountered during the upgrade process. This file
A log of errors that were encountered during the upgrade process. This file
should be empty if the upgrade was successful.
ontologies/update/changedData/removedData.n3
an N3 file containing all the statements that were removed from the knowledge base.
An N3 file containing all the statements that were removed from the knowledge base.
ontologies/update/changedData/addedData.n3
an N3 file containing all the statements that were added to the knowledge base.
An N3 file containing all the statements that were added to the knowledge base.
B. Ontology knowledge base manual review
@ -195,7 +195,7 @@ the following types of changes:
should be reasserted using the newly added property.
Annotation property default values
It a site has modified the value of a vitro annotation (such as
If a site has modified the value of a vitro annotation (such as
displayRankAnnot or displayLimitAnnot) so that it is
no longer using the default, then that setting will be left unchanged.
If a site is using the default value of a vitro annotation, and the
@ -211,7 +211,7 @@ A. Verifying the File Storage upgrade
If the File Storage upgrade process is not successful, Tomcat's "vivo.all.log"
log file will contain an exception listing with more information.
The File Storage upgrade process will create these files in the Vivo upload
The File Storage upgrade process will create these files in the VIVO upload
directory:
upgrade/upgradeLog.2010-00-00T00-00-00.txt
@ -282,7 +282,7 @@ which makes the required changes:
Each image file will be copied to its new location in the upload
directory.
Cleaning the old image directory.
Cleaning the old image directory
All image files are removed from their old locations in the upload
directory.