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various and sundry data migration changes

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This commit is contained in:
brianjlowe 2013-09-19 14:18:49 -04:00
parent aca312b7cc
commit 6d77fc7871
12 changed files with 65 additions and 24 deletions
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2
productMods/WEB-INF/ontologies/update/diff.tab.txt
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17
productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Editorship.sparql Normal file
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@ -0,0 +1,17 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#Thing>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?person vivo:relatedBy _:Editorship .
_:Editorship a vivo:Editorship .
_:Editorship vivo:relates ?person .
_:Editorship vivo:relates ?document .
?document vivo:relatedBy _:Editorship .
} WHERE {
{
?person vivo:editorOf ?document
} UNION {
?document vivo:editor ?person
}
}

1
productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Grant.sparql → productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/post/Grant.sparql
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@ -8,4 +8,5 @@ CONSTRUCT {
} WHERE {
?agent <ihttp://purl.obolibrary.org/obo/RO_0000053> ?role .
?role vivo:relatedBy ?grant
FILTER NOT EXISTS { ?grant vivo:relates ?agent }
}

0
productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/awardedDegree.sparql → productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/post/awardedDegree.sparql
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9
productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/vcard2.sparql
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@ -2,6 +2,7 @@ PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?vcard v:hasName _:name .
@ -9,6 +10,8 @@ CONSTRUCT {
_:name v:givenName ?firstName .
_:name vivo:middleName ?middleName .
_:name v:familyName ?lastName .
_:name v:honorificPrefix ?prefix .
_:name v:honorificSuffix ?suffix .
} WHERE {
?s arg:ARG_2000028 ?vcard .
OPTIONAL {
@ -23,5 +26,11 @@ CONSTRUCT {
?s vivo:middleName ?middleName
BIND("yes" as ?test)
}
OPTIONAL {
?s bibo:prefixName ?prefix
}
OPTIONAL {
?s bibo:suffixName ?suffix
}
FILTER(bound(?test))
}

14
productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/EditorshipDel.sparql Normal file
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@ -0,0 +1,14 @@
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#Thing>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
CONSTRUCT {
?person vivo:editorOf ?document .
?document vivo:editor ?person
} WHERE {
{
?person vivo:editorOf ?document
} UNION {
?document vivo:editor ?person
}
}

4
productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/awardedDegreeDel.sparql → productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/post/awardedDegreeDel.sparql
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@ -8,11 +8,13 @@ CONSTRUCT {
?educationalProcess vivo:relates ?org .
?org vivo:relatedBy ?educationalProcess .
} WHERE {
?educationalProcess <http://purl.obolibrary.org/obo/RO_0002234> ?degree .
?person <http://purl.obolibrary.org/obo/RO_0000056> ?educationalProcess .
?educationalProcess a vivo:EducationalProcess .
?educationalProcess <http://purl.obolibrary.org/obo/RO_0002234> ?degree .
OPTIONAL { ?degree <http://purl.obolibrary.org/obo/RO_0002353> ?educationalProcess }
OPTIONAL {
?educationalProcess vivo:relates ?org .
?org a foaf:Organization .
}
?degree a vivo:AcademicDegree .
}

9
productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/vcardDel.sparql
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@ -2,11 +2,14 @@ PREFIX arg: <http://purl.obolibrary.org/obo/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX vivo: <http://vivoweb.org/ontology/core#>
PREFIX bibo: <http://purl.org/ontology/bibo/>
CONSTRUCT {
?s foaf:firstName ?firstName .
?s foaf:lastName ?lastName .
?s vivo:middleName ?middleName .
?s bibo:prefixName ?prefix .
?s bibo:suffixName ?suffix .
?s vivo:email ?email .
?s vivo:primaryEmail ?primaryEmail .
?s vivo:phoneNumber ?phoneNumber .
@ -25,6 +28,12 @@ CONSTRUCT {
}
UNION {
?s vivo:middleName ?middleName
}
UNION {
?s bibo:prefixName ?prefix
}
UNION {
?s bibo:suffixName ?suffix
}
UNION {
?s vivo:email ?email

BIN
rdf/display/everytime/.PropertyConfig.n3.swp Normal file
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11
rdf/tbox/filegraph/contact-vcard.owl
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@ -2,6 +2,7 @@
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/arg/contact-vcard.owl#"
xml:base="http://purl.obolibrary.org/obo/arg/contact-vcard.owl"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
@ -2086,6 +2087,16 @@ Was called IMPP in vCard.</rdfs:comment>
<!-- http://vivoweb.org/ontology/core#F1000Link -->
<owl:Class rdf:about="http://vivoweb.org/ontology/core#F1000Link">
<rdfs:label xml:lang="en">f1000 link</rdfs:label>
<rdfs:subClassOf rdf:resource="http://www.w3.org/2006/vcard/ns#URL"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">F1000 is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews.</obo:IAO_0000112>
</owl:Class>
<!-- http://www.w3.org/2006/vcard/ns#Unknown -->
<owl:Class rdf:about="http://www.w3.org/2006/vcard/ns#Unknown">

12
rdf/tbox/filegraph/contact.owl
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@ -78,18 +78,6 @@
<!-- http://vivoweb.org/ontology/core#URLLink -->
<owl:Class rdf:about="http://vivoweb.org/ontology/core#URLLink">
<rdfs:label xml:lang="en">urllink</rdfs:label>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The full URL.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uniform Resource Locator (URL) specifies where an identified resource is available and the mechanism for retrieving it.</obo:IAO_0000115>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://info.slis.indiana.edu/~katy/</obo:IAO_0000112>
</owl:Class>
<!-- http://www.w3.org/2004/02/skos/core#Concept -->
<owl:Class rdf:about="http://www.w3.org/2004/02/skos/core#Concept"/>

10
rdf/tbox/filegraph/publication.owl
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@ -1017,16 +1017,6 @@ This class allows for linking an author to a publication while indicating inform
<!-- http://vivoweb.org/ontology/core#F1000Link -->
<owl:Class rdf:about="http://vivoweb.org/ontology/core#F1000Link">
<rdfs:label xml:lang="en">f1000 link</rdfs:label>
<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#URLLink"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">F1000, is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews.</obo:IAO_0000112>
</owl:Class>
<!-- http://vivoweb.org/ontology/core#InvitedTalk -->
<owl:Class rdf:about="http://vivoweb.org/ontology/core#InvitedTalk">