various and sundry data migration changes

productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Editorship.sparql

@@ -0,0 +1,17 @@
+PREFIX vivo: <http://vivoweb.org/ontology/core#> 
+PREFIX owl: <http://www.w3.org/2002/07/owl#Thing> 
+PREFIX foaf: <http://xmlns.com/foaf/0.1/>
+
+CONSTRUCT {
+    ?person vivo:relatedBy _:Editorship .
+    _:Editorship a vivo:Editorship .
+    _:Editorship vivo:relates ?person .
+    _:Editorship vivo:relates ?document .
+    ?document vivo:relatedBy _:Editorship .
+} WHERE {
+    { 
+      ?person vivo:editorOf ?document
+    } UNION {
+      ?document vivo:editor ?person
+    }
+}

productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/post/Grant.sparql

@@ -8,4 +8,5 @@ CONSTRUCT {
 } WHERE {
     ?agent <ihttp://purl.obolibrary.org/obo/RO_0000053> ?role .
     ?role vivo:relatedBy ?grant
+    FILTER NOT EXISTS { ?grant vivo:relates ?agent } 
 }

productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/vcard2.sparql

@@ -2,6 +2,7 @@ PREFIX arg: <http://purl.obolibrary.org/obo/>
 PREFIX foaf: <http://xmlns.com/foaf/0.1/> 
 PREFIX v:   <http://www.w3.org/2006/vcard/ns#> 
 PREFIX vivo: <http://vivoweb.org/ontology/core#> 
+PREFIX bibo: <http://purl.org/ontology/bibo/>
 
 CONSTRUCT {
     ?vcard v:hasName _:name .
@@ -9,6 +10,8 @@ CONSTRUCT {
     _:name v:givenName ?firstName .
     _:name vivo:middleName ?middleName .
     _:name v:familyName ?lastName .
+    _:name v:honorificPrefix ?prefix .
+    _:name v:honorificSuffix ?suffix .
 } WHERE {
      ?s arg:ARG_2000028 ?vcard .
     OPTIONAL {
@@ -23,5 +26,11 @@ CONSTRUCT {
         ?s vivo:middleName ?middleName 
         BIND("yes" as ?test)
     } 
+    OPTIONAL {
+        ?s bibo:prefixName ?prefix 
+    }
+    OPTIONAL {
+        ?s bibo:suffixName ?suffix
+    }
     FILTER(bound(?test))
 }

productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/EditorshipDel.sparql

@@ -0,0 +1,14 @@
+PREFIX vivo: <http://vivoweb.org/ontology/core#> 
+PREFIX owl: <http://www.w3.org/2002/07/owl#Thing> 
+PREFIX foaf: <http://xmlns.com/foaf/0.1/>
+
+CONSTRUCT {
+    ?person vivo:editorOf ?document .
+    ?document vivo:editor ?person
+} WHERE {
+    { 
+      ?person vivo:editorOf ?document
+    } UNION {
+      ?document vivo:editor ?person
+    }
+}

productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/post/awardedDegreeDel.sparql

@@ -8,11 +8,13 @@ CONSTRUCT {
     ?educationalProcess vivo:relates ?org .
     ?org vivo:relatedBy ?educationalProcess .
 } WHERE {
+    ?educationalProcess <http://purl.obolibrary.org/obo/RO_0002234> ?degree .
+    ?person <http://purl.obolibrary.org/obo/RO_0000056> ?educationalProcess .
+    ?educationalProcess a vivo:EducationalProcess .
     ?educationalProcess <http://purl.obolibrary.org/obo/RO_0002234> ?degree .
     OPTIONAL { ?degree <http://purl.obolibrary.org/obo/RO_0002353> ?educationalProcess }
     OPTIONAL {
         ?educationalProcess vivo:relates ?org .
         ?org a foaf:Organization . 
     }
-    ?degree a vivo:AcademicDegree .
 }

productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/vcardDel.sparql

@@ -2,11 +2,14 @@ PREFIX arg: <http://purl.obolibrary.org/obo/>
 PREFIX foaf: <http://xmlns.com/foaf/0.1/>
 PREFIX v:   <http://www.w3.org/2006/vcard/ns#>
 PREFIX vivo: <http://vivoweb.org/ontology/core#>
+PREFIX bibo: <http://purl.org/ontology/bibo/> 
 
 CONSTRUCT {
         ?s foaf:firstName ?firstName .
         ?s foaf:lastName ?lastName .
         ?s vivo:middleName ?middleName .
+        ?s bibo:prefixName ?prefix .
+        ?s bibo:suffixName ?suffix .
         ?s vivo:email ?email .
         ?s vivo:primaryEmail ?primaryEmail . 
         ?s vivo:phoneNumber ?phoneNumber .
@@ -25,6 +28,12 @@ CONSTRUCT {
     } 
     UNION {
         ?s vivo:middleName ?middleName 
+    }
+    UNION {
+        ?s bibo:prefixName ?prefix 
+    } 
+    UNION {
+        ?s bibo:suffixName ?suffix
     } 
     UNION {
         ?s vivo:email ?email

rdf/tbox/filegraph/contact-vcard.owl

@@ -2,6 +2,7 @@
 <rdf:RDF xmlns="http://purl.obolibrary.org/obo/arg/contact-vcard.owl#"
      xml:base="http://purl.obolibrary.org/obo/arg/contact-vcard.owl"
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:obo="http://purl.obolibrary.org/obo/"
      xmlns:owl="http://www.w3.org/2002/07/owl#"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
@@ -2086,6 +2087,16 @@ Was called IMPP in vCard.</rdfs:comment>
     
 
 
+    <!-- http://vivoweb.org/ontology/core#F1000Link -->
+
+    <owl:Class rdf:about="http://vivoweb.org/ontology/core#F1000Link">
+        <rdfs:label xml:lang="en">f1000 link</rdfs:label>
+        <rdfs:subClassOf rdf:resource="http://www.w3.org/2006/vcard/ns#URL"/>
+        <obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">F1000 is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews.</obo:IAO_0000112>
+    </owl:Class>
+
+
+
     <!-- http://www.w3.org/2006/vcard/ns#Unknown -->
 
     <owl:Class rdf:about="http://www.w3.org/2006/vcard/ns#Unknown">

rdf/tbox/filegraph/contact.owl

@@ -78,18 +78,6 @@
     
 
 
-    <!-- http://vivoweb.org/ontology/core#URLLink -->
-
-    <owl:Class rdf:about="http://vivoweb.org/ontology/core#URLLink">
-        <rdfs:label xml:lang="en">urllink</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
-        <obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The full URL.</obo:IAO_0000112>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uniform Resource Locator (URL) specifies where an identified resource is available and the mechanism for retrieving it.</obo:IAO_0000115>
-        <obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://info.slis.indiana.edu/~katy/</obo:IAO_0000112>
-    </owl:Class>
-    
-
-
     <!-- http://www.w3.org/2004/02/skos/core#Concept -->
 
     <owl:Class rdf:about="http://www.w3.org/2004/02/skos/core#Concept"/>

rdf/tbox/filegraph/publication.owl

@@ -1017,16 +1017,6 @@ This class allows for linking an author to a publication while indicating inform
     
 
 
-    <!-- http://vivoweb.org/ontology/core#F1000Link -->
-
-    <owl:Class rdf:about="http://vivoweb.org/ontology/core#F1000Link">
-        <rdfs:label xml:lang="en">f1000 link</rdfs:label>
-        <rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#URLLink"/>
-        <obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">F1000, is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews.</obo:IAO_0000112>
-    </owl:Class>
-    
-
-
     <!-- http://vivoweb.org/ontology/core#InvitedTalk -->
 
     <owl:Class rdf:about="http://vivoweb.org/ontology/core#InvitedTalk">