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Small editorial changes.

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ejc12 2010-07-25 20:32:47 +00:00
parent 3b7f484858
commit c476602e1a
1 changed files with 10 additions and 10 deletions
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doc/upgrade-1.1.txt
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@ -46,9 +46,9 @@ exceptions:
with the revised ontology. See the section on "Ontology Changes" with the revised ontology. See the section on "Ontology Changes"
below for more information. below for more information.
* The first time Apache Tomcat starts up after the upgrade, it will * The first time Apache Tomcat starts up after the upgrade, it will
initiate a process that modifies the uploads directory (images), to align initiate a process that modifies the uploaded files directory (images), to
the uploaded files with the revised file storage scheme. See the section align the uploaded files with the revised file storage scheme. See the
on "File Storage Changes" below for more information. section on "File Storage Changes" below for more information.
------------------------------------------------------------------------------- -------------------------------------------------------------------------------
@ -141,19 +141,19 @@ the automated upgrade process was executed successfully. The ontology alignment
process will create the following files in the Tomcat webapps/vivo/WEB-INF directory: process will create the following files in the Tomcat webapps/vivo/WEB-INF directory:
ontologies/update/logs/knowledgeBaseUpdate.log ontologies/update/logs/knowledgeBaseUpdate.log
a log of a summary of updates that were made to the knowledge base and notes A log of a summary of updates that were made to the knowledge base and notes
about some recommended manual reviews. This file should end with about some recommended manual reviews. This file should end with
"Successfully finished processing ontology changes". "Successfully finished processing ontology changes".
ontologies/update/logs/knowledgeBaseUpdate.error.log ontologies/update/logs/knowledgeBaseUpdate.error.log
a log of errors that were encountered during the upgrade process. This file A log of errors that were encountered during the upgrade process. This file
should be empty if the upgrade was successful. should be empty if the upgrade was successful.
ontologies/update/changedData/removedData.n3 ontologies/update/changedData/removedData.n3
an N3 file containing all the statements that were removed from the knowledge base. An N3 file containing all the statements that were removed from the knowledge base.
ontologies/update/changedData/addedData.n3 ontologies/update/changedData/addedData.n3
an N3 file containing all the statements that were added to the knowledge base. An N3 file containing all the statements that were added to the knowledge base.
B. Ontology knowledge base manual review B. Ontology knowledge base manual review
@ -195,7 +195,7 @@ the following types of changes:
should be reasserted using the newly added property. should be reasserted using the newly added property.
Annotation property default values Annotation property default values
It a site has modified the value of a vitro annotation (such as If a site has modified the value of a vitro annotation (such as
displayRankAnnot or displayLimitAnnot) so that it is displayRankAnnot or displayLimitAnnot) so that it is
no longer using the default, then that setting will be left unchanged. no longer using the default, then that setting will be left unchanged.
If a site is using the default value of a vitro annotation, and the If a site is using the default value of a vitro annotation, and the
@ -211,7 +211,7 @@ A. Verifying the File Storage upgrade
If the File Storage upgrade process is not successful, Tomcat's "vivo.all.log" If the File Storage upgrade process is not successful, Tomcat's "vivo.all.log"
log file will contain an exception listing with more information. log file will contain an exception listing with more information.
The File Storage upgrade process will create these files in the Vivo upload The File Storage upgrade process will create these files in the VIVO upload
directory: directory:
upgrade/upgradeLog.2010-00-00T00-00-00.txt upgrade/upgradeLog.2010-00-00T00-00-00.txt
@ -282,7 +282,7 @@ which makes the required changes:
Each image file will be copied to its new location in the upload Each image file will be copied to its new location in the upload
directory. directory.
Cleaning the old image directory. Cleaning the old image directory
All image files are removed from their old locations in the upload All image files are removed from their old locations in the upload
directory. directory.