adding collections process terms (#165)
* adding collections process terms No JIRA :(
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@ -5982,6 +5982,32 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th
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<!-- http://purl.obolibrary.org/obo/BCO_0000003 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/BCO_0000003">
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<rdfs:label xml:lang="en">Data Collection Process</rdfs:label>
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<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#CollectionProcess"/>
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<obo:IAO_0000112 xml:lang="en">Observing and recording the presence or absence of butterflies during a transect walk.; A trip camera capture of an image of a jaguar is an observation, because it is "selected" by the camera as worthy of obsevation simply by virtue of moving in front of the camera.; Seeing three pelicans flying overhead on Christmas day and report them as part of the Christmas Bird Count.</obo:IAO_0000112>
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<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
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<obo:IAO_0000115 xml:lang="en">A process in which a person or machine sees or detects a material entity and selects it as worthy of observation, and which has as output an information content entity about the selected material entity.</obo:IAO_0000115>
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<obo:IAO_0000116 xml:lang="en">Under development</obo:IAO_0000116>
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<vitro:descriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A collection process in which an information content entity is collected for research or scholarly purposes. The immediate use case is recording observations of taxa (presence/absence). Need to figure out how this relates to OBI assay OBI:0000070. maybe has broader synonym OBI:0000070</vitro:descriptionAnnot>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/BCO_0000042 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/BCO_0000042">
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<rdfs:label xml:lang="en">Taxonomic Identification Process</rdfs:label>
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<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#IdentificationProcess"/>
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<obo:IAO_0000112 xml:lang="en">Using a key to identify a plant in the field.; Using DNA barcoding to identify a plant species.; Associating a museum specimen with a specific taxonomic concept based on its characters.; Using BLAST to identify the taxa present in an environmental (metagenomic) sample.</obo:IAO_0000112>
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<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
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<obo:IAO_0000115 xml:lang="en">A curation process in which a taxonomic name is appied to a biological entity to denote membership in a taxon.</obo:IAO_0000115>
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</owl:Class>
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<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
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<!-- http://purl.obolibrary.org/obo/BFO_0000001 -->
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001">
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000001">
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@ -9754,6 +9780,20 @@ This class allows for linking an author to a publication while indicating inform
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<!-- http://vivoweb.org/ontology/core#GeoreferencingProcess -->
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#GeoreferencingProcess">
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<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#CurationProcess"/>
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<obo:IAO_0000111>Georeferenced</obo:IAO_0000111>
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<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
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<obo:IAO_0000115 xml:lang="en">A curation process in which a material entity is annotated with geo-coordinates to indicate the location of a collection</obo:IAO_0000115>
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<obo:IAO_0000116 xml:lang="en">Under development</obo:IAO_0000116>
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<obo:IAO_0000117 xml:lang="en">PERSON: Anne Thessen</obo:IAO_0000117>
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<rdfs:label xml:lang="en">Georeferencing Process</rdfs:label>
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</owl:Class>
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<!-- http://vivoweb.org/ontology/core#GovernmentAgency -->
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<!-- http://vivoweb.org/ontology/core#GovernmentAgency -->
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#GovernmentAgency">
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#GovernmentAgency">
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@ -9846,6 +9886,21 @@ This class allows for linking an author to a publication while indicating inform
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<!-- http://vivoweb.org/ontology/core#IdentificationProcess -->
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#IdentificationProcess">
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<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#CurationProcess"/>
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<obo:IAO_0000111>Identified</obo:IAO_0000111>
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<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
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<obo:IAO_0000115 xml:lang="en">A curation process in which a term is appied to a material entity to denote its type or kind</obo:IAO_0000115>
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<obo:IAO_0000116 xml:lang="en">Under development</obo:IAO_0000116>
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<obo:IAO_0000117 xml:lang="en">PERSON: Anne Thessen</obo:IAO_0000117>
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<vitro:descriptionAnnot>This is intended to apply to a wide variety of material entities, not just biological specimens.</vitro:descriptionAnnot>
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<rdfs:label xml:lang="en">Identification Process</rdfs:label>
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</owl:Class>
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<!-- http://vivoweb.org/ontology/core#Institute -->
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<!-- http://vivoweb.org/ontology/core#Institute -->
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#Institute">
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#Institute">
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@ -10028,6 +10083,21 @@ This class allows for linking an author to a publication while indicating inform
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<!-- http://vivoweb.org/ontology/core#MeasurementProcess -->
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#MeasurementProcess">
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<rdfs:subClassOf rdf:resource="http://vivoweb.org/ontology/core#CurationProcess"/>
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<obo:IAO_0000111>Measured</obo:IAO_0000111>
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<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000123"/>
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<obo:IAO_0000115 xml:lang="en">A curation process in which data are collected about a specimen in a collection</obo:IAO_0000115>
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<obo:IAO_0000116 xml:lang="en">Under development</obo:IAO_0000116>
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<obo:IAO_0000117 xml:lang="en">PERSON: Anne Thessen</obo:IAO_0000117>
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<vitro:descriptionAnnot>possibly has broader synonym OBI assay OBI:0000070 because all measurement processes will be assays, but not all assays will be performed on a material entity in a collection</vitro:descriptionAnnot>
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<rdfs:label xml:lang="en">Measurement Process</rdfs:label>
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</owl:Class>
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<!-- http://vivoweb.org/ontology/core#MedicalResidency -->
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<!-- http://vivoweb.org/ontology/core#MedicalResidency -->
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#MedicalResidency">
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<owl:Class rdf:about="http://vivoweb.org/ontology/core#MedicalResidency">
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