Commit graph

5125 commits

Author SHA1 Message Date
5b09d25189 Copied wilma 2021-10-14 15:32:41 +02:00
84895e0de6 Issue template added 2021-10-14 15:32:41 +02:00
56e815b3d2 Added ontologies 2021-10-14 15:32:41 +02:00
0627efe799 Modified ontology 2021-10-14 15:32:41 +02:00
fa486ecf8a Modifications for fixed ontology 2021-10-14 15:32:41 +02:00
41ccfda2c4 Fixed mistake in query 2021-10-14 15:32:41 +02:00
1964267ca9 Added custom fields 2021-10-14 15:32:41 +02:00
2425ff570e Fix for previous commit 2021-10-14 15:32:41 +02:00
a67fbe6ded Added articles info to excerpt 2021-10-14 15:32:41 +02:00
245360af06 templates update 2021-10-14 15:32:41 +02:00
9e1df433c9 Updates for templates 2021-10-14 15:32:41 +02:00
102de0c3fd Templates and SPARQL requests for rubrics, elenph excerpts and articles 2021-10-14 15:32:41 +02:00
Dragan Ivanovic
47a221b866 Update issue templates 2021-10-07 16:33:04 +02:00
Ralph O'Flinn
abd40c25f5
updates to outdated URLs and branch names (#251) (#252)
updates to outdated URLs and branch names (typically master -> main)
2021-10-06 06:38:19 -05:00
Dragan Ivanovic
7046bdfad7 Update issue templates 2021-10-06 12:54:10 +02:00
Dragan Ivanovic
657b6922f9 Update issue templates 2021-10-06 12:52:47 +02:00
Ralph O'Flinn
9f6b545b84 Merge branch 'rel-1.12.0-RC' into main 2021-07-21 07:09:36 -05:00
Ralph O'Flinn
584b34c682 [maven-scm-plugin] prepare development vivo-1.12.1-SNAPSHOT-SNAPSHOT 2021-06-23 00:19:07 -05:00
Ralph O'Flinn
9b0de5f3d4 [maven-scm-plugin] prepare release vivo-1.12.0 2021-06-23 00:16:40 -05:00
Brian Lowe
09e4ea732a
Add self-activating profiles for building Vitro-languages and VIVO-l… (#245)
* Add self-activating profiles for compiling Vitro-languages and VIVO-languages in place of i18n profile

* Remove trailing whitespace
2021-06-22 13:48:05 -05:00
Brian Lowe
109b5a4fe1
Update version numbers in pom.xmls (#244)
* Update version numbers in pom.xmls

* Restore -SNAPSHOT
2021-06-21 04:11:24 -05:00
e1dc5c9775
Merge pull request #240 from brianjlowe/issue/VIVO-1983
[VIVO-1983] Limit label management values to current locale
2021-06-17 23:33:40 +02:00
Brian Lowe
3de9a03ab5 Update comment 2021-06-16 21:54:48 +03:00
Brian Lowe
f4f6dddb11 Retrieve locales used in label statements instead of only selectable locales 2021-06-16 21:43:30 +03:00
a9a095397e
Merge pull request #243 from brianjlowe/issue/VIVO-1996
[VIVO-1996] Retain language tags in manage publications query results to allow for language filtering
2021-06-16 17:07:55 +02:00
Brian Lowe
603e7f6bc8
Do not offer UMLS vocabulary in interface if umls.properties is absent. (#241)
* Replace hardcoded en locale with current locale in lang attributes

* Do not offer UMLS vocabulary service in interface if umls.properties is absent
2021-06-09 08:02:46 -06:00
Michel Héon
e3027841aa
integrate in a single Maven call the compilation and installation of (#242)
Integrate in a single Maven call the compilation and installation of VIVO-Languages and Vitro-Languages in VIVO.
2021-06-04 17:17:17 +03:00
Brian Lowe
dc56107d4d Pass languageCount value to label macro 2021-06-04 17:00:26 +03:00
Brian Lowe
49eedfe0a0 Retain language tags in manage publication query results to allow for language filtering 2021-06-03 19:40:07 +03:00
Brian Lowe
43289ba71e Get language-aware results for existing labels in ManageLabelsForPersonGenerator 2021-05-28 15:52:16 +03:00
Brian Lowe
9652127081 Merge branch 'rel-1.12.0-RC' of https://github.com/vivo-project/VIVO into rel-1.12.0-alpha 2021-05-27 16:20:08 +03:00
Brian Lowe
631986a2d5
Issue/vivo 1981 (#239)
* Replace hardcoded en locale with current locale in lang attributes

* Update README with current wiki link; add details to Docker Compose installation instructino.
2021-05-11 10:07:53 -05:00
Ben
5d257cae6b
[VIVO-1982] - Set default email params to blank (#238)
* Set default email params to blank

* Comment out email settings
2021-05-07 11:46:57 +03:00
Brian Lowe
8b161f948e
Add usePreciseSubqueries property to example.runtime.properties (#233) 2021-05-05 10:36:46 -06:00
Brian Lowe
fe764ded51 Merge branch 'rel-1.12.0-alpha' of https://github.com/vivo-project/VIVO into rel-1.12.0-alpha 2021-05-03 19:35:17 +03:00
Brian Lowe
fe1498319a
Add note to runtime.properties that TPF should not be used if VIVO contains restricted data. (#236) 2021-04-27 10:43:59 -06:00
Brian Lowe
f4d187a601
Allow 'create new' for vivo:governingAuthorityFor. Resolve https://jira.lyrasis.org/browse/VIVO-1820 (#234) 2021-04-21 12:38:32 -05:00
Brian Lowe
29728b3b40
Add additional URI finder that will reindex a person if its associate… (#227)
* Add additional URI finder that will reindex a person if its associated title or email resource is deleted altogether.

* Remove redundant identical query; eliminate unused prefix.
2021-04-21 11:54:23 -05:00
Brian Lowe
250566446f
Replace hardcoded en locale with current locale in lang attributes (#237) 2021-04-21 11:53:35 -05:00
Brian Lowe
2be59bbe02
Fix issues preventing rendering and functioning of temporal graph. Resolve https://jira.lyrasis.org/browse/VIVO-1978 (#235) 2021-04-21 10:14:16 -05:00
Brian Lowe
d72472824a Replace hardcoded en locale with current locale in lang attributes 2021-04-21 17:19:44 +03:00
Brian Lowe
2fa7cce5c7
Move non-language-specific Vitro annotations to VIVO tbox firsttime d… (#225)
* Move non-language-specific Vitro annotations to VIVO tbox firsttime directory.

* Update tbox/firsttime readme to document difference between vitroAnnotations.n3 and initialTBoxAnnotations.n3
2021-03-30 15:05:11 -05:00
Brian Lowe
fe09808b1b
Retrieve sitemap profile URLs only after consuming result set in order to avoid transaction errors with TDB. Resolve https://jira.lyrasis.org/browse/VIVO-1910 (#231) 2021-03-30 09:41:24 -06:00
Ralph O'Flinn
d00d7de585
Revert deployment strategy (#230)
* revert deployment changes

* update docker and compose for previous deployment

* minor readme update

* use package instead of install

this avoids exploding war file in tomcat but seems to be missing overlays for VIVO theme

* test docker workflow

* test deploy workflow

* add package profile for home

* skip deploy for installer

* skip installer by profile

* update workflows

* minor readme update

* use app-name for vivo log file name

* Update log4j.properties

Co-authored-by: William Welling <wwelling@library.tamu.edu>
2021-03-24 01:46:24 -05:00
Ralph O'Flinn
1dd2851e45
Revert "revert deployment changes (#228)" (#229)
This reverts commit 7773db3394.
2021-03-24 01:41:41 -05:00
William Welling
7773db3394
revert deployment changes (#228)
* revert deployment changes

* update docker and compose for previous deployment

* minor readme update

* use package instead of install

this avoids exploding war file in tomcat but seems to be missing overlays for VIVO theme

* test docker workflow

* test deploy workflow

* add package profile for home

* skip deploy for installer

* skip installer by profile

* update workflows

* minor readme update

* use app-name for vivo log file name

* Update log4j.properties
2021-03-22 20:37:13 +02:00
hauschke
47fb4fdc05
Update LICENSE (#226)
Update license year to 2021.
2021-03-12 16:31:39 +02:00
dependabot[bot]
fdda5f0774
Bump junit from 4.11 to 4.13.1 in /api (#195)
Bumps [junit](https://github.com/junit-team/junit4) from 4.11 to 4.13.1.
- [Release notes](https://github.com/junit-team/junit4/releases)
- [Changelog](https://github.com/junit-team/junit4/blob/main/doc/ReleaseNotes4.11.md)
- [Commits](https://github.com/junit-team/junit4/compare/r4.11...r4.13.1)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-02-18 10:11:44 -06:00
dependabot[bot]
0d5049f3b6
Bump junit from 4.12 to 4.13.1 in /selenium (#196)
Bumps [junit](https://github.com/junit-team/junit4) from 4.12 to 4.13.1.
- [Release notes](https://github.com/junit-team/junit4/releases)
- [Changelog](https://github.com/junit-team/junit4/blob/main/doc/ReleaseNotes4.12.md)
- [Commits](https://github.com/junit-team/junit4/compare/r4.12...r4.13.1)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-02-18 10:11:14 -06:00
William Welling
880ac5b797
VIVO-1963: Initial docker compose (#223)
* initial docker compose

* for docker volume use direct tdb filemode

* runtime properties with solr url configured

* move gitattributes to root to ensure scripts stay valid

* fix VIVO dockerfile command permissions

* use public vivoweb/vivo-solr image

* start script improvements

* pass docker compose env to containers

* generate digest.md5 of existing VIVO home

* add initial readme

* reset docker compose env defaults

* minor readme updates
2021-02-18 10:07:19 -06:00