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Author SHA1 Message Date
Holly Mistlebauer
2754ad7da8 Holly made another batch of test case changes for release 1.7, rc 1. 2014-06-16 13:40:25 -04:00
Holly Mistlebauer
64e5eacf3b Holly made first batch of test case changes for release 1.7 rc 1. 2014-06-16 11:32:57 -04:00
Tim Worrall
6279d4f770 Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2014-06-16 10:50:18 -04:00
j2blake
d61709730d VIVO 767 Listen for changes to VCards and re-index. 2014-06-14 11:04:59 -04:00
Tim Worrall
be4fba9b48 ensure that vcard individuals that are authors do not display as links 2014-06-13 16:33:22 -04:00
Tim Worrall
94f7fea0c2 updated list view templates to ensure correct reference of element ID 2014-06-13 16:23:46 -04:00
j2blake
38658bdcd9 VIVO-738 When ORCID ID is removed, it is deleted also. 2014-06-13 16:01:51 -04:00
j2blake
cd355373a6 VIVO 746, at startup, remove obsolete Permissions from the user accounts model. 
Also, get rid of UpdatePermissionSetUris, which supported the transition from 1.4 to 1.5.
 2014-06-13 10:27:40 -04:00
j2blake
ce0a8a8512 VIVO-773 remove references to IRI-0.8 library. 
Converted to 0.9.6
 2014-06-13 10:25:27 -04:00
Tim Worrall
751e752778 minor tweak to list view 2014-06-12 16:43:07 -04:00
brianjlowe
106325ba72 holding required empty directories in git 2014-06-12 14:08:41 -04:00
Tim Worrall
4e5071758e set display levels on position subtypes so that th eprimary position can be filtered out of list view 2014-06-12 10:34:37 -04:00
j2blake
2b25bfa851 Merge commit '0c21855fc5bf12f75e14d4f598f51a3120ec8005' into feature/TDBfromRDB2 2014-06-11 16:47:49 -04:00
brianjlowe
0c21855fc5 tweak to initial tbox annotations 2014-06-11 15:14:39 -04:00
brianjlowe
a607b240a5 VIVO-786 and VIVO-751 changes to default property annotations and 1.7 migration 2014-06-11 14:19:00 -04:00
j2blake
153cd6f117 VIVO-773 create the RDB to TDB migration utility. 2014-06-11 12:07:05 -04:00
Tim Worrall
67ce187eac minor design and css changes for person-level visualization pages 2014-06-10 12:08:41 -04:00
Tim Worrall
c2d24cb74d VIVO-454 2014-06-09 17:11:34 -04:00
j2blake
f4541133b6 VIVO-773 guard against RDB data that has not been migrated. 2014-06-09 15:38:20 -04:00
j2blake
228adaaf13 VIVO-719 Improve the user interface 2014-06-09 15:14:06 -04:00
Tim Worrall
15169ca894 fixed query subject in generator 2014-06-09 14:34:11 -04:00
j2blake
52caf0237f VIVO-719 Create the first attempt at restore. 2014-06-06 17:15:20 -04:00
Tim Worrall
9ef66e8764 VIVO-694: resolved null pointer exception with web pages 2014-06-06 16:22:18 -04:00
Tim Worrall
2cc05784c7 VIVO-508: clean up old IE css files and references 2014-06-06 14:52:57 -04:00
Tim Worrall
0b51403690 VIVO-559: add abiliy to delete degree candidacy in edit mode 2014-06-06 12:18:39 -04:00
Tim Worrall
a9b3bfd9c2 VIVO-785: make middle name optional in list view and fix advisor genertor to clarify role 2014-06-06 11:04:23 -04:00
Tim Worrall
8c1e3cde93 VIVO-654: make role label fields on custom forms optional input, not required 2014-06-04 16:56:49 -04:00
Tim Worrall
78ee69ee00 VIVO-743: new custom forms for adding participant to project andcontributor to grant/contract 2014-06-03 13:02:24 -04:00
j2blake
b823bb4eae VIVO-773 Remove "connectDB" function of advanced data tools. 
It was tied up with RDB. It could have been converted, but there was little interest.
 2014-06-03 10:28:27 -04:00
Tim Worrall
cf64f9cf85 updates to list view to correctly access name parts 2014-06-02 11:33:52 -04:00
j2blake
8b33229fdd VIVO-773 Update the JENA libraries and adjust to the changes 
Replace the JAR files with more current ones.
Add a one-line change to BaseInfGraph (from the Jena source), so it will work with Pellet 2.3.1
Adjust all implementations of Graph to include new methods and remove old ones.
Add annotations and generics to reduce compiler warnings.
Remove all dependencies on RDB, which is no longer supported.
   This requires considerable refactoring of JenaIngestController, RDFUploadController, listModels.jsp
Refactor the ModelMaker uses
   Remove VitroJenaModelMaker,
   Revise VitroInterceptingModelMaker to be configurable for Config or Content models
Add debug logging code to ModelChangeImpl ChangeSetImpl, RDFServiceJena.
Add TDB support: RDFServiceFactoryTDB, RDFServiceTDB
   Refactor RDFServiceJena and RDFServiceSDB so much of the code can be reused by RDFServiceTDB
Accomodate two RDFService instances - one for Configuration models and one for Content models.
   Changes to RDFServiceUtils, RDFServiceSetup
   Configuration models use TDB directory in Vitro home directory
Handle bulk updating:
   Jena has deprecated bulk operations, and their models classes no longer use the bulk updaters
   Create a VitroModelFactory to use instead of the ModelFactory, when bulk updating is required.
   Create adapter classes: BulkUpdatingModel, BulkUpdatingOntModel, AbstractModelDecorator
Make the configuration model setup algorithms uniform
   Combine ApplicationModelSetup and UserModelSetup into ConfigurationModelsSetup
 2014-06-01 18:26:31 -04:00
Tim Worrall
02a2fe600c VIVO-743: custom form to add a person to a project 2014-05-30 16:22:53 -04:00
tworrall
5575bda929 VIVO-737: allow for entry of full orcid id/url 2014-05-23 12:23:09 -04:00
tworrall
54ca2a4b79 VIVO-763: display the url type on the manage page 2014-05-23 11:36:36 -04:00
hudajkhan
c70aa2ae5a Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2014-05-23 11:18:14 -04:00
tworrall
3f0597ec9d Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2014-05-22 13:58:44 -04:00
tworrall
d33e48114f list view update 2014-05-22 13:58:23 -04:00
tworrall
8cfaaa25c7 new list view to display degrees on educational process objects 2014-05-22 13:58:12 -04:00
tworrall
032b12d414 added educational process faux properties 2014-05-22 13:57:56 -04:00
tworrall
4d85cf2cf5 added contract faux properties 2014-05-22 13:57:42 -04:00
j2blake
3dba210af2 VIVO-773 clean up some of the queries used in building the search index 
The new JENA libraries won't allow a clause of the form (str(?result) as ?result), since the variable "result" is already bound.
 2014-05-22 13:08:04 -04:00
tworrall
eb802e2c6a needed to filter out most specific types where the type is not in a class group 2014-05-22 10:49:59 -04:00
tworrall
269b38b5d7 VIVO-763: any subclass of vcard:URL will now display in the picklist when creating or editing a webpage 2014-05-22 10:01:03 -04:00
tworrall
5168e188f8 VIVO-749: fixed double quotes problem on webpage form 2014-05-21 16:26:41 -04:00
tworrall
24a4c2c56d add class group check to list view 2014-05-21 15:40:49 -04:00
tworrall
6ce1e4be33 new list view for grants and contracts awarded by organizations 2014-05-21 13:08:38 -04:00
hudajkhan
8a73bd5ae9 Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2014-05-20 11:01:09 -04:00
tworrall
51af4db0d2 more/less toggle was missing 2014-05-19 16:26:18 -04:00
tworrall
2745a91c04 minor change to java script to ensure correct url is in place 2014-05-19 12:40:52 -04:00
j2blake
b46859b9a7 fix licensing complaint from Jenkins 2014-05-16 10:49:25 -04:00