vivo/paper/paper.md

title	tags	authors	affiliations	date	bibliography
VIVO: a system for research discovery	ontology semantic-web linked-data research-discovery open-scholarship linked-open-data open-science Java	name orcid affiliation Michael Conlon 0000-0002-1304-8447 1 name orcid affiliation Andrew Woods 0000-0002-8318-4225 2 name orcid affiliation Graham Triggs 0000-0001-8530-8917 2, 3 name orcid affiliation Ralph O'Flinn 0000-0003-4002-1335 5 name orcid affiliation Muhammad Javed 0000-0001-9770-7640 4 name orcid affiliation Jim Blake 0000-0002-2487-2554 4 name orcid affiliation Benjamin Gross 0000-0002-7908-1987 9, 10 name orcid affiliation Qazi Azim Ijaz Ahmad 0000-0001-8959-6370 3 name orcid affiliation Sabih Ali 0000-0002-7140-8754 6 name orcid affiliation Martin Barber 0000-0001-7924-0741 3 name Orcid affiliation Don Elsborg 0000-0003-0100-716X 7 name orcid affiliation Kitio Fofack 0000-0002-6187-4436 8 name orcid affiliation Christian Hauschke 0000-0003-2499-7741 3 name orcid affiliation Violeta Ilik 0000-0003-2588-3084 11 name orcid affiliation Huda Khan 0000-0001-5156-4621 4 name orcid affiliation Ted Lawless 0000-0002-3287-5202 10, 12 name orcid affiliation Jacob Levernier 0000-0003-1563-7314 13 name orcid affiliation Brian Lowe 0000-0002-8143-6345 14 name affiliation Jose Luis Martin 15 name affiliation Steve McKay 16 name orcid affiliation Simon Porter 0000-0002-6151-8423 6 name orcid affiliation Tatiana Walther 0000-0001-8127-2988 3 name Orcid affiliation Marijane White 0000-0001-5059-4132 17 name Orcid affiliation Stefan Wolff 0000-0003-0015-9671 18 name Orcid affiliation Rebecca Younes 0000-0002-5105-1401 4	name index University of Florida, Gainesville, Florida, US 1 name index Duraspace, Inc., Beaverton, OR, US 2 name index Technische Informationsbibliothek (TIB) – German National Library of Science and Technology, Hannover, DE 3 name index Cornell University, Ithaca, NY, US 4 name index University of Alabama Birmingham, Birmingham, AL, US 5 name index Digital Science, London, UK 6 name index University of Colorado, Boulder, CO, US 7 name index Université du Québec à Montréal, Montréal, QC, CA 8 name index UNAVCO, Inc., Boulder, CO, US 9 name index Clarivate Analytics, Inc., Philadelphia, PA, US 10 name index Columbia University, New York, NY, US 11 name index Brown University, Providence, RI, US 12 name index University of Pennsylvania, Philadelphia, PA, US 13 name index Ontocale SRL, Bucharest, RO 14 name index Universidad Carlos III de Madrid, Madrid, ES 15 name index Plum Analytics, Inc., Philadelphia, PA, US 16 name index Oregon Health & Science University, Portland, OR, US 17 name index Sächsische Landesbibliothek Staats und Universitätsbibliothek, Dresden, DE 18	19 July 2018	paper.bib

Summary

VIVO [Pronunciation: vee-voh] is member-supported, enterprise open source software and an ontology for representing scholarship. VIVO supports recording, editing, searching, browsing and visualizing scholarly activity. VIVO encourages research discovery, expert finding, network analysis and assessment of research impact. VIVO is easily extended to support additional domains of scholarly activity [@borner_vivo:_2012].

VIVO uses an ontology to represent people, papers, grants, projects, datasets, resources, and other elements of research and scholarship as linked open data. The ontology can be used to create RDF that can be loaded into VIVO. VIVO RDF data is easily exported for use in other applications.

VIVO includes Vitro [@about_vitro:2018], a domain-free engine for managing linked open data, the JFact reasoner [@jfact_2018], SolR [@solr_2018] for search, SPARQL query [@sparql_2018], Jena as a triple store [@jena_2018], supporting both TDB [@jena_tdb_2018] and SDB [@jena_sdb_2018] on MySQL [@mysql_2018], uses D3 [@bostock_d3_2018] for visualizations, and provides multiple APIs, including Triple Pattern Fragments [@verborgh_triple_2016] for rapid remote access to specified data.

Using VIVO, organizations can represent the activities and accomplishments of their scholars as linked open data, and share that data with others.

Acknowledgements

The authors wish to acknowledge the foundational work done on VIVO, and VIVO concepts by the team at the Mann Agricultural Library, Cornell University, led by Jon Corson-Rikert. The authors also wish to acknowledge NIH grant 1U24RR029822-01 to the first author, which funded the work of more than 120 co-investigators in the further development of the VIVO software, and to Dr. Melissa Haendel of Oregon Health Science University for her significant advances in the VIVO Integrated Semantic Framework [@vivo-isf-ontology:_2018], which VIVO uses to represent scholarship. Finally, the authors wish to acknowledge the many hundreds of members of the VIVO community around the world, who volunteer their time and effort to advance the art of representing scholarship as linked open data. The work described here builds on the work of many others.

References