Commit graph

742 commits

Author SHA1 Message Date
brianjlowe
78a2af3904 VIVO-361 label consistency 2013-10-14 15:30:16 -04:00
brianjlowe
af91d950be small migration bugs 2013-10-14 09:48:35 -04:00
brianjlowe
55d59190e5 VIVO-325 skos:Concept migration 2013-10-10 14:37:55 -04:00
brianjlowe
a3d138698d restoring hasCollaborator and affiliatedOrganization for 1.6 2013-10-04 15:45:23 -04:00
hudajkhan
984e2f6f4c updates for label, new individual form, external vocab search 2013-10-02 14:56:58 -04:00
brianjlowe
d71c995e0e various migration fixes 2013-09-27 13:44:21 -04:00
brianjlowe
1149ab273b data migration work 2013-09-23 15:57:28 -04:00
brianjlowe
4047b4e8a9 data migration work 2013-09-20 15:42:17 -04:00
brianjlowe
5f0bd4a74c awarded degree sparql construct fixes 2013-09-19 16:05:30 -04:00
brianjlowe
6d77fc7871 various and sundry data migration changes 2013-09-19 14:18:49 -04:00
brianjlowe
702890a26f annotation data migration 2013-09-18 16:22:09 -04:00
brianjlowe
a60c4ff048 Grant and AdvisingRelationship migration 2013-09-13 11:32:55 -04:00
brianjlowe
fd8de955f5 awardedDegree migration 2013-09-12 10:44:03 -04:00
brianjlowe
745a4a26e8 VIVO-256 migrate orcid to URI reference 2013-09-11 10:17:32 -04:00
brianjlowe
c367ce4fd6 moving PropertyConfigSupp.n3 to the right directory 2013-09-10 10:24:28 -04:00
brianjlowe
5c14c1355d Merge commit '69a45e573a' into dev-isf
Conflicts:
	productMods/WEB-INF/filegraph/tbox/geopolitical.tbox.ver1.1-11-18-11.owl
	productMods/WEB-INF/filegraph/tbox/isDefinedBy-1.5.owl
	productMods/WEB-INF/filegraph/tbox/scires-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-bibo-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-c4o-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-core-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-dcelements-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-dcterms-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-event-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-fabio-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-foaf-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-pws-1.5.owl
	productMods/WEB-INF/filegraph/tbox/vivo-skos-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/geopolitical.tbox.ver1.1-11-18-11.owl
	productMods/WEB-INF/ontologies/update/oldVersion/isDefinedBy-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/scires-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-bibo-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-c4o-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-core-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-dcelements-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-dcterms-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-event-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-fabio-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-foaf-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-pws-1.5.owl
	productMods/WEB-INF/ontologies/update/oldVersion/vivo-skos-1.5.owl
	productMods/templates/freemarker/body/partials/individual/individual-positions.ftl
	rdf/abox/filegraph/us-states.rdf
	rdf/tbox/filegraph/geopolitical.tbox.ver1.1-11-18-11.owl
	rdf/tbox/filegraph/isDefinedBy-1.5.owl
	rdf/tbox/filegraph/scires-1.5.owl
	rdf/tbox/filegraph/vivo-bibo-1.5.owl
	rdf/tbox/filegraph/vivo-c4o-1.5.owl
	rdf/tbox/filegraph/vivo-core-1.5.owl
	rdf/tbox/filegraph/vivo-dcelements-1.5.owl
	rdf/tbox/filegraph/vivo-dcterms-1.5.owl
	rdf/tbox/filegraph/vivo-event-1.5.owl
	rdf/tbox/filegraph/vivo-fabio-1.5.owl
	rdf/tbox/filegraph/vivo-foaf-1.5.owl
	rdf/tbox/filegraph/vivo-pws-1.5.owl
	rdf/tbox/filegraph/vivo-skos-1.5.owl
2013-09-10 09:09:42 -04:00
brianjlowe
40cd735752 last of the vcard migration (I hope) 2013-09-09 11:49:23 -04:00
tworrall
aeac0411d4 Merge branch 'dev-isf' of https://github.com/vivo-project/VIVO into dev-isf 2013-09-06 17:03:31 -04:00
tworrall
15168eb8ea VIVO-112: updates for educational training and awards 2013-09-06 17:02:43 -04:00
brianjlowe
1c60c24002 VCard migration 2013-09-06 16:41:15 -04:00
hudajkhan
a9ebf8f94b updates for concept search and label management 2013-09-05 15:45:49 -04:00
brianjlowe
5d2e44c08f property link suppression annotations 2013-09-04 10:01:11 -04:00
brianjlowe
722307358f subclasses of skos:Concept 2013-09-03 09:01:22 -04:00
tworrall
cae4fe03c1 VIVO-112: more changes for role related forms and addAuthorToPub 2013-08-29 12:35:35 -04:00
tworrall
59431742e1 VIVO-112: another round of updates to support the ISF changes 2013-08-28 16:58:02 -04:00
brianjlowe
978c9ccd5f added domain and range to bearer_of and removed has_role and has_function 2013-08-28 10:08:54 -04:00
j2blake
1994ab03a1 VIVO-274 move permission_config.n3 to rdf/auth/everytime
Get rid of the PermissionSetsLoader, keep the smoke tests.
2013-08-27 17:26:35 -04:00
tworrall
027f9b6966 VIVO-112: updates to property config and a java class to correct property names 2013-08-27 15:38:52 -04:00
brianjlowe
74cd0e062d updated realizedBy/realizes properties 2013-08-27 11:13:52 -04:00
brianjlowe
f0ba88badc Merge branch 'dev-isf' of https://github.com/vivo-project/VIVO into dev-isf 2013-08-27 10:34:08 -04:00
brianjlowe
de05954218 ongoing work on ISF support 2013-08-27 10:33:22 -04:00
tworrall
35d136fec3 VIVO-112 ISF changes relating to custom forms and list views 2013-08-26 16:58:49 -04:00
brianjlowe
43d92a8cd8 VCard migration (in progress) 2013-08-23 11:03:04 -04:00
brianjlowe
0312ebd448 ISF filegraph improvements 2013-08-23 11:02:39 -04:00
hudajkhan
706e0ae1c1 Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop
Conflicts:
	.gitignore
2013-08-22 15:54:37 -04:00
hudajkhan
0511404a47 updates to remove errant file and updates for adding concept 2013-08-22 15:48:56 -04:00
brianjlowe
3230186415 in-process update of TBox filegraphs for latest ISF 2013-08-21 16:25:17 -04:00
brianjlowe
7eb6f92d69 improvements to ISF filegraphs 2013-08-21 11:44:16 -04:00
j2blake
37c35468ca VIVO-248 Move more RDF files into the home directory
Files for initializing the display, displayTbox and displayDisplay models. Also restructure the RDFFilesLoader.
2013-08-21 11:27:41 -04:00
j2blake
71ce2beffc VIVO-248 Move more RDF files into the home directory
Files for initializing the TBOX, ABOX, ApplicationMetadata and UserAccounts models.
2013-08-20 17:14:09 -04:00
brianjlowe
12b384f5eb changing bearerOf/inheresIn in diff.tab.txt to use the RO URIs instead of BFO2 URIs 2013-08-20 16:54:09 -04:00
brianjlowe
0e92596459 removing unneeded bfo file from file graphs 2013-08-20 15:45:01 -04:00
j2blake
ca951c6bf3 VIVO-248 Move filegraph RDF files into the home directory 2013-08-20 15:26:09 -04:00
tworrall
55a4d1dc35 Merge branch 'develop' of https://github.com/vivo-project/VIVO into develop 2013-08-19 14:52:19 -04:00
tworrall
e5df3b70ba another minor correction to the text 2013-08-19 14:52:03 -04:00
brianjlowe
ed71f74e10 continued work on ISF conversion and data migration 2013-08-09 16:24:08 -04:00
j2blake
1c9f9f5f1a VIVO-246 Re-implement the FreemarkerConfiguration
The Configuration must contain mutable information like the theme directory and the TemplateLoader. It must also be request-specific so it can have the correct Locale for language support. But we should only have one instance, so there is only one TemplateCache (alternatively, one TemplateCache per theme).

Previously, this was addressed by intercepting the Template processing and adding the request-based info to the Environment. However, this interception code needed to appear each time a Template was processed. This was sometimes overlooked, and at best introduced a bunch of duplicated code.

Instead, I extended the freemarker Configuration class to include a ThreadLocal that holds request-specific information.
2013-08-08 13:23:40 -04:00
tworrall
6950aab59c fixed a typo 2013-08-07 15:02:42 -04:00
brianjlowe
c162d3d84b position form updates for ISF 2013-08-06 16:55:15 -04:00
brianjlowe
afedf991f2 in-process conversion of position rendering to ISF 2013-08-06 16:23:44 -04:00