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249 commits

Author SHA1 Message Date
jrpence
4ff87201a3 Attempting to make the file harvest help message more helpful. 2011-08-18 18:25:36 +00:00
hjkhjk54
1c4d73da07 Updates for including termType as information to be displayed in custom list view as well as editing page (and added in the N3). 2011-08-16 21:02:45 +00:00
hjkhjk54
dd44eeb314 Updates for terminology annotation, sending submission URL from jsp to javascript instead of hard-coding. Also including some basic validation by preventing submission when no terms are selected. 2011-08-16 17:00:01 +00:00
hjkhjk54
dc46b3e195 Adding changes and code for terminology annotation support and integration of UMLS vocabulary 2011-08-15 21:48:08 +00:00
tankchintan
40245b1a91 1. Improved logic in data response for temporal graphs. 
2. Fixed a performance problem with co-investigator network visualization.
 2011-08-10 23:02:42 +00:00
ryounes
69b315effe NIHVIVO-2508 Change template properties to methods so not pre-computed. 2011-08-05 22:25:47 +00:00
ryounes
2e20918beb NIHVIVO-2508 Preparation for exposing some template model methods as methods rather than properties. Also condensed code used to generate editing links for menu management. 2011-08-03 14:55:20 +00:00
hjkhjk54
fcdff9ea54 Updates for NIHVIVO-3086 and NIHVIVO-2980 and subtasks: updating page data getters to rely on java class name, separating out internal class-specific set up and processing for menu management into VIVO code. 2011-08-02 15:24:29 +00:00
tankchintan
9a87463e61 1. Improvement of response time for co-pi visualization. In future remove the custom contruct queries and make use of cached, at least for the gramnts since they are very expensive. 2011-07-27 23:44:59 +00:00
tankchintan
6c3818f84a 1. Fix for http://issues.library.cornell.edu/browse/NIHVIVO-3070 made sure that the rows in the table for person level vis were created based on whether the entity in question has egoURI or not, instead of depending upon flash vis to provide sorted list with egoNode being the first element. 
2. Tentative fix for http://issues.library.cornell.edu/browse/NIHVIVO-2953 will wait to hear more to change the UX further.

3. Fix for http://issues.library.cornell.edu/browse/NIHVIVO-2523 the current placement for downloading of this csv is subject to change.
 2011-07-27 21:44:45 +00:00
tankchintan
8ce8edc7c2 1. Removing dead code belonging to uncached version for temporal graphs. 2011-07-22 23:07:00 +00:00
tankchintan
842b709120 1. Removing dead code belonging to uncached version for temporal graphs. 2011-07-22 23:02:48 +00:00
tankchintan
d1f8bdc7c1 1. Removing dead code belonging to uncached version for temporal graphs. 2011-07-22 22:53:15 +00:00
cappadona
eb567572bd NIHVIVO-3005 NIHVIVO-3007 Merged r3374 from maint-rel-1.3 branch. 2011-07-22 15:51:24 +00:00
tankchintan
54b390b851 1. Fix for issue http://issues.library.cornell.edu/browse/NIHVIVO-3019 
2. Also changed the text in different cases for the error.
Code reviewed by Chin Hua.
 2011-07-21 20:31:36 +00:00
j2blake
77f721b463 merge r.3356 from the rel 1.3 maintenance branch. 2011-07-21 14:25:04 +00:00
cappadona
73e299ec79 NIHVIVO-2997 Merged r3354 from maint-rel-1.3 branch. 2011-07-21 12:49:15 +00:00
j2blake
66c1c3b4e4 Merge r3349 and 3350 from release 1.3 branch 2011-07-20 22:08:02 +00:00
cappadona
1d151e27bc Merged r3346 from maint-rel-1.3 branch. 2011-07-20 20:29:54 +00:00
ryounes
d21b9a0fab Add license tag 2011-07-20 19:37:54 +00:00
ryounes
d0d31436ae NIHVIVO-2974 Allow for vivo-specific extensions to SiteAdminController. Move vivo-specific links to this extension. 2011-07-20 19:26:52 +00:00
brianjlowe
3c31cb77f3 switching QR codes to use new getUnfilteredWebappDaoFactory() method 2011-07-18 17:49:05 +00:00
ryounes
d391a82591 Move getSelfEditingId() from vivo-specific IndividualTemplateModel to BaseIndividualTemplateModel, since the property is defined and managed at the vitro level 2011-07-18 17:10:49 +00:00
brianjlowe
2137af2798 NIHVIVO-2957 unfiltered DAO factory for QR code 2011-07-18 15:26:13 +00:00
brianjlowe
5c99d7e3bf NIHVIVO-2957 unfiltered DAO factory for QR code 2011-07-18 15:18:51 +00:00
brianjlowe
3400b33576 modified QR code code to use normal WebappDaoFactory 2011-07-18 15:02:55 +00:00
tankchintan
6f213a61fa 1. Changed icon for map of science. 
2. Bug fixes for map of science edge cases.
3. Included a default error message when there are no publications to be found.
4. Improved text for map of sience info.
 2011-07-13 22:39:28 +00:00
tankchintan
dccaf298b1 1. Improved layout for map of science vis. 
2. Removed sys print.
3. Added new info icon content to map of science vis.
 2011-07-13 20:25:50 +00:00
tankchintan
dbdf2de95b 1. Improved layout for map of science. 
2. Made sure that all sub-disciplines & disciplines are exported in the csv file even though they dont have any associated value.
 2011-07-13 17:38:26 +00:00
tankchintan
330393e329 1. Fix for licensing-related build failure. 2011-07-13 00:59:02 +00:00
tankchintan
51208948f2 1. Adding the tools menu for visualizations. This will provide detailed explanation on why we need the cache refreshing for visualizations and also the link to initiating the reconstruct. It is only accessible to the admins. 2011-07-13 00:36:53 +00:00
tankchintan
a83c1180f4 1. Cleanup of old files. 
2. Fix for the NIHVIVO-2818 issue.
 2011-07-12 22:05:41 +00:00
tankchintan
f2148a785c 1. Modified visualization request handlers so that they can handle privileges i.e. give access to users who have the right permissions to view that visualization related page. 
2. Improved how short url parameters were extracted.
3. Added a new feature "Refresh Visualziation Cache" which reconstructs all the models that are currently saved. This so that the admin can rebuild the vis cache instead of having to restart the server to rebuilding the cache.
 2011-07-12 19:30:05 +00:00
briancaruso
40fef365bd Adding render time filtering of script elements to avoid javascript based security exploits. NIHVIVO-2678 2011-07-11 23:21:43 +00:00
ryounes
2936d1730c NIHVIVO-707 Suppress delete link on core:webpage, and suppress add/edit/delete links on core:webpageOf 2011-07-08 21:30:47 +00:00
mbarbier
8dc72f55db fileharvest.ftl: remove outdated help 
CsvFileHarvestJob: add some stuff in preparation for handling new Harvester script format
FileHarvestController: send the text of the running script to the client
 2011-07-08 20:37:34 +00:00
ryounes
9ee6a96c55 NIHVIVO-2449 In search results, display preferredTitle with fallback to mostSpecificTypes 2011-07-06 19:02:49 +00:00
ryounes
fface83a87 NIHVIVO-2449 Display preferred title on individuallist page 2011-07-05 23:03:51 +00:00
mbarbier
977d859cd6 Some minor file harvest changes 2011-07-05 20:49:23 +00:00
mbarbier
52a933c20d ---FILE HARVEST--- 
web.xml: Add file harvest mapping
fileharvest.xml: renamed from testfile.xml
testfile.xml: deleted
CsvFileHarvestJob.java: bug fixes
FileHarvestController.java: renamed from TestFileController.java
TestFileController.java: deleted
 2011-06-30 20:13:34 +00:00
mbarbier
e28b7d7247 File Harvest: almost done 2011-06-29 21:13:36 +00:00
mbarbier
d5965b8112 Massive work done on File Harvest 2011-06-28 20:33:51 +00:00
j2blake
3c3d230666 NIHVIVO-2758 Move SelfEditorRelationshipPolicy and unit tests from Vitro into Vivo, since it uses URIs from the Vivo ontology. Change the package. 2011-06-24 19:15:14 +00:00
j2blake
e9b9597809 NIHVIVO-2758 Move VivoPolicy from Vitro into Vivo. Change the package and merge the Setup class. 2011-06-24 18:53:55 +00:00
mbarbier
5ceda63a65 Improved parsing of additions file, add some job-specific UI stuff 2011-06-23 20:41:21 +00:00
ryounes
31a8ec8b3a NIHVIVO-2744 Display of mostSpecificType(s) on individual profile (in place of former moniker). 2011-06-23 15:00:27 +00:00
mbarbier
6ee5771c01 testfile.ftl, CsvFileHarvestJob.java, FileHarvestJob.java, TestFileController.java: continued construction 2011-06-16 20:53:49 +00:00
mbarbier
5b609cf299 CsvFileHarvestJob.java: created 2011-06-15 21:02:52 +00:00
mbarbier
83194eb293 testfile.ftl, FileHarvestJob.java, TestFileController.java: Major updates, still too general and under-construction for a more specific report 2011-06-15 21:02:09 +00:00
mbarbier
f28203e8f4 FileHarvestJob.java: Commit interface. 
TestFileController.java: Re-commit with FileHarvestJob.  Used an interface method from the uncommitted code, which had broken the build earlier.
 2011-06-09 15:09:32 +00:00